![]() The first step when using PyImageJ is to create an ImageJ2 gateway. While it downloads and caches the needed Java libraries.įor detailed installation instructions and requirements, see Takes an additional ~30 seconds to ~2-3 minutes (depending on bandwidth) Installation time takes approximately 20 seconds. Mamba create -n pyimagej -c conda-forge pyimagej openjdk=8Īlternately, you can install PyImageJ with pip, but in thisĬase you will need to install OpenJDK and Maven manually. Here is how to createĪnd activate a new conda environment with PyImageJ available: conda install mamba -n base -c conda-forge ![]() PyImageJ can be installed using Conda+ Mamba. In addition, PyImageJ requires OpenJDK and Maven to be installed. PyImageJ will not function properly if dependency versions are too old. matplotlib (optional, for ij.py.show function only).PyImageJ requires the following packages: PyImageJ has been tested on the following operating systems: Notably, PyImageJ can be installed and used on server infrastructure for PyImageJ will run on a range of hardware, we recommend the following RAM Performance to support the workflow operations defined by the user. PyImageJ requires at minimum a standard computer with enough RAM and CPU ![]() Jump into the documentation and tutorials to get started! System Requirements Hardware Requirements SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more. With other tools available from the Python software ecosystem, including NumPy, It also supports the original ImageJ API and data structures.Ī major advantage of this approach is the ability to combine ImageJ and ImageJ2 PyImageJ provides a set of wrapper functions for integration between ImageJ2Īnd Python.
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